fgenesh1_pg.C_scaffold_11000002 (Cochliobolus heterostrophus C5)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_11000002 T13726_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_11000002 CCHC ZF 35 52
fgenesh1_pg.C_scaffold_11000002 CCHC ZF 146 163

Links

Other CCHC ZF family RBPs
Other Cochliobolus heterostrophus C5 RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_50000002 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_50000002 N 1.000
fgenesh1_pg.C_scaffold_40000010 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_40000010 N 1.000
fgenesh1_pg.C_scaffold_5000047 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_5000047 N 1.000
fgenesh1_pg.C_scaffold_5000115 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_5000115 N 1.000
estExt_fgenesh1_pg.C_370009 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_370009 N 1.000
fgenesh1_pg.C_scaffold_38000003 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_38000003 N 1.000
fgenesh1_pg.C_scaffold_38000005 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_38000005 N 1.000
fgenesh1_pg.C_scaffold_24000143 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_24000143 N 1.000
fgenesh1_pg.C_scaffold_30000058 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_30000058 N 1.000
fgenesh1_pg.C_scaffold_28000061 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_28000061 N 1.000
estExt_fgenesh1_pg.C_210004 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210004 N 0.972
fgenesh1_pg.C_scaffold_3000356 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_3000356 N 0.972
fgenesh1_pg.C_scaffold_13000211 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_13000211 N 0.972
fgenesh1_pg.C_scaffold_18000002 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_18000002 N 0.889
fgenesh1_pg.C_scaffold_40000018 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_40000018 N 0.861
fgenesh1_pg.C_scaffold_9000348 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_9000348 N 0.806