fgenesh1_pg.C_scaffold_14000100 (Phytophthora ramorum)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_14000100 T13764_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_14000100 CCHC ZF 8 25
fgenesh1_pg.C_scaffold_14000100 CCHC ZF 41 58
fgenesh1_pg.C_scaffold_14000100 CCHC ZF 61 78
fgenesh1_pg.C_scaffold_14000100 CCHC ZF 83 100
fgenesh1_pg.C_scaffold_14000100 CCHC ZF 106 123
fgenesh1_pg.C_scaffold_14000100 CCHC ZF 130 147

Links

Other CCHC ZF family RBPs
Other Phytophthora ramorum RBPs

1 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PITG_09786 Phytophthora infestans PITG_09786 N 0.972