fgenesh1_pg.C_scaffold_2046000001 (Phytophthora ramorum)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_2046000001 T13833_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_2046000001 CCHC ZF 96 113

Links

Other CCHC ZF family RBPs
Other Phytophthora ramorum RBPs

11 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_2414000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2414000001 N 1.000
fgenesh1_pg.C_scaffold_828000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_828000001 N 1.000
fgenesh1_pg.C_scaffold_19000103 Phytophthora ramorum fgenesh1_pg.C_scaffold_19000103 N 1.000
fgenesh1_pg.C_scaffold_70000058 Phytophthora ramorum fgenesh1_pg.C_scaffold_70000058 N 1.000
fgenesh1_pg.C_scaffold_74000005 Phytophthora ramorum fgenesh1_pg.C_scaffold_74000005 N 1.000
fgenesh1_pg.C_scaffold_264000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_264000001 N 1.000
fgenesh1_pg.C_scaffold_45000086 Phytophthora ramorum fgenesh1_pg.C_scaffold_45000086 N 1.000
fgenesh1_pg.C_scaffold_42000027 Phytophthora ramorum fgenesh1_pg.C_scaffold_42000027 N 1.000
fgenesh1_pg.C_scaffold_13000152 Phytophthora ramorum fgenesh1_pg.C_scaffold_13000152 N 0.778
Genemark.10812_g Serpula lacrymans Genemark.10812_g N 0.722
ISCW003168 Ixodes scapularis ISCW003168 N 0.722