CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.10905.1.1
(
Capitella teleta
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
gw1.10905.1.1
T14574_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.10905.1.1
CCHC ZF
1
16
CYNCNEPGHFSRECPK
gw1.10905.1.1
CCHC ZF
31
48
PQCFNCHEQGHYARDCQK
Links
Other
CCHC ZF
family RBPs
Other
Capitella teleta
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.2524.3.1
Capitella teleta
e_gw1.2524.3.1
N
0.917
gw1.9150.2.1
Capitella teleta
gw1.9150.2.1
N
0.889
fgenesh1_pg.C_scaffold_1619000002
Capitella teleta
fgenesh1_pg.C_scaffold_1619000002
N
0.889
fgenesh1_pg.C_scaffold_1263000003
Capitella teleta
fgenesh1_pg.C_scaffold_1263000003
N
0.861