CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.163.50.1
(
Physcomitrella patens
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
gw1.163.50.1
T14580_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.163.50.1
CCHC ZF
602
619
GTCHVCGQRGHRANDCPS
Links
Other
CCHC ZF
family RBPs
Other
Physcomitrella patens
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.7.306.1
Physcomitrella patens
gw1.7.306.1
N
1.000
fgenesh1_pg.C_scaffold_3000233
Neurospora tetrasperma
fgenesh1_pg.C_scaffold_3000233
N
0.722
NCU00483
Neurospora crassa
NCU00483
N
0.722