CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
mgf022913m
(
Mimulus guttatus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
mgf022913m
T14659_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf022913m
CCHC ZF
289
306
NGCFVCGKPGHKAKDCTR
Links
Other
CCHC ZF
family RBPs
Other
Mimulus guttatus
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os10g21730
Oryza sativa
LOC_Os10g21730
N
0.722
LOC_Os12g06580
Oryza sativa
LOC_Os12g06580
N
0.722
LOC_Os12g22820
Oryza sativa
LOC_Os12g22820
N
0.722
LOC_Os08g17700
Oryza sativa
LOC_Os08g17700
N
0.722
LOC_Os07g27510
Oryza sativa
LOC_Os07g27510
N
0.722
LOC_Os05g49110
Oryza sativa
LOC_Os05g49110
N
0.722
LOC_Os07g12840
Oryza sativa
LOC_Os07g12840
N
0.722
LOC_Os07g23400
Oryza sativa
LOC_Os07g23400
N
0.722
LOC_Os01g34630
Oryza sativa
LOC_Os01g34630
N
0.722