Medtr1g127130 (Medicago truncatula)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 Medtr1g127130 T15077_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr1g127130.1 CCHC ZF 67 84
Medtr1g127130.1 CCHC ZF 92 109
Medtr1g127130.1 CCHC ZF 117 134
Medtr1g127130.1 CCHC ZF 144 161
Medtr1g127130.1 CCHC ZF 171 188

Links

Other CCHC ZF family RBPs
Other Medicago truncatula RBPs

11 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma20g29830.1 Glycine max Glyma20g29830.1 N 0.800
chr5.CM0148.200.nc Lotus japonicus chr5.CM0148.200.nc N 0.778
Glyma10g37970.1 Glycine max Glyma10g37970.1 N 0.778
GSVIVG00028962001 Vitis vinifera GSVIVG00028962001 N 0.767
30147.m013737 Ricinus communis 30147.m013737 N 0.733
cassava21292.m1 Manihot esculenta cassava21292.m1 N 0.733
LOC_Os04g46920 Oryza sativa LOC_Os04g46920 N 0.711
MDP0000158436 Malus x domestica MDP0000158436 N 0.711
PK24306.1 Cannabis sativa PK24306.1 N 0.711
SB06G024880 Sorghum bicolor Sb06g024880 N 0.700
MDP0000322696 Malus x domestica MDP0000322696 N 0.700