CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AB03863.1
(
Alternaria brassicicola
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
AB03863.1
T15246_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AB03863.1
CCHC ZF
16
33
TLCQKCLKRGHYSYECKA
Links
Other
CCHC ZF
family RBPs
Other
Alternaria brassicicola
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
EAT87800.2
Phaeosphaeria nodorum
EAT87800.2
N
1.000
SNOG_05409
Stagonospora nodorum
SNOG_05409
N
1.000
PTRG_04194
Pyrenophora tritici repentis
PTRG_04194
N
1.000
FOXG_05436
Fusarium oxysporum
FOXG_05436
N
0.889
NCU01017
Neurospora crassa
NCU01017
N
0.889
An08g00930
Aspergillus niger
CADANGAG00006412
N
0.889
FVEG_02700
Fusarium verticillioides
FVEG_02700
N
0.889
GSTUMT00003933001
Tuber melanosporum
GSTUMT00003933001
N
0.889