CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAF69197
(
Xenopus laevis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
AAF69197
T16439_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAF69197
CCHC ZF
273
290
FRCYACSRVGHIARNCTV
Links
Other
CCHC ZF
family RBPs
Other
Xenopus laevis
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAF69198
Xenopus laevis
AAF69198
N
0.944
AAF04406
Xenopus laevis
AAF04406
N
0.944
AAH55957
Xenopus laevis
AAH55957
N
0.944
ENSXETG00000010073
Xenopus tropicalis
ENSXETG00000010073
N
0.833
ENSXETG00000007597
Xenopus tropicalis
ENSXETG00000007597
N
0.833
ENSXETG00000027095
Xenopus tropicalis
ENSXETG00000027095
N
0.778
ENSXETG00000027303
Xenopus tropicalis
ENSXETG00000027303
N
0.778
ENSXETG00000026589
Xenopus tropicalis
ENSXETG00000026589
N
0.778
ENSXETG00000013845
Xenopus tropicalis
ENSXETG00000013845
N
0.778
ENSXETG00000001186
Xenopus tropicalis
ENSXETG00000001186
N
0.778
ENSXETG00000018776
Xenopus tropicalis
ENSXETG00000018776
N
0.778
ENSXETG00000026345
Xenopus tropicalis
ENSXETG00000026345
N
0.778