CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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P27536
(
Xenopus laevis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
P27536
T16458_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
P27536
CCHC ZF
413
430
RKCYSCGKYGHIARFCRT
Links
Other
CCHC ZF
family RBPs
Other
Xenopus laevis
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI69799
Xenopus laevis
AAI69799
N
1.000
CAA41397
Xenopus laevis
CAA41397
N
1.000
PK05836.1
Cannabis sativa
PK05836.1
N
0.778
NCBI_GNO_37600002
Daphnia pulex
NCBI_GNO_37600002
N
0.722
NCBI_GNO_3500123
Daphnia pulex
NCBI_GNO_3500123
N
0.722
NCBI_GNO_4800144
Daphnia pulex
NCBI_GNO_4800144
N
0.722