CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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YBX2
(
Spermophilus tridecemlineatus
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
ENSSTOG00000008630
T17028_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000007729
CSD
2
39
QVLGTVKWFNVRNGYGFINRNGTKEDVFVHQXXXXXXX
Links
Other
CSD
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSMLUG00000013593
Myotis lucifugus
ENSMLUG00000013593
N
0.947
YB-1
Homo sapiens
ENSG00000065978
D
0.725
AAH94195
Xenopus laevis
AAH94195
N
0.718
csda
Xenopus tropicalis
ENSXETG00000016239
I
0.718
fgenesh2_pg.scaffold_14000192
Branchiostoma floridae
fgenesh2_pg.scaffold_14000192
N
0.711