CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cey-4
(
Caenorhabditis elegans
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
Y39A1C.3
T17151_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Y39A1C.3.1
CSD
88
162
GVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGP
Y39A1C.3.2
CSD
88
162
GVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGP
Links
Other
CSD
family RBPs
Other
Caenorhabditis elegans
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN17666
Caenorhabditis brenneri
CBN17666
N
0.893
CRE04844
Caenorhabditis remanei
CRE04844
N
0.853
CBG18298
Caenorhabditis briggsae
CBG18298
N
0.750
CJA14237
Caenorhabditis japonica
CJA14237
N
0.725
LOAG_08235
Loa loa
LOAG_08235
N
0.707