CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.12.410.1
(
Coccomyxa C 169
)
CSD,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
PF00076 (RRM_1)
IPR002059
IPR000504
gw1.12.410.1
T17453_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.12.410.1
RRM
1
43
EQIIMRDKYTNRPRGFGFLTLDDEDAAAQICQGTHVLDGRQID
gw1.12.410.1
CSD
8
44
KYTNRPRGFGFLTLDDEDAAAQICQGTHVLDGRQIDA
gw1.12.410.1
RRM
59
128
LFVGGLAPETTEDNFKEYFGQFGDITEAQIMQDHTSGRSRGFGFITYEDEEAIEKVFAKGRMHELAGKNV
gw1.12.410.1
CSD
93
122
TSGRSRGFGFITYEDEEAIEKVFAKGRMHE
Links
Other
CSD,RRM
family RBPs
Other
Coccomyxa C 169
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.11.337.1
Chlorella vulgaris
gw1.11.337.1
N
0.968