CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s14500g26t1
(
Acyrtosiphon pisum
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
DGIL_AUG5s14500g26t1
T18010_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s14500g26t1
KH
224
283
TDEFNVRDDLMGLAIGAHGTNIQQARRVDGITNIELDEHTGVFKIYGENKDAVMKARGIL
DGIL_AUG5s14500g26t1
KH
287
357
EEFLQVPRDFIGKVIGKNGRNIQDIVDKSGVIRVKIEGDNEPQPTIPREEGQVPFVFVGTVESISNAKVLL
Links
Other
KH
family RBPs
Other
Acyrtosiphon pisum
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PHUM440700
Pediculus humanus
PHUM440700
I
0.840
nasonia_NCBI_hmm462784
Nasonia vitripennis
nasonia_NCBI_hmm462784
I
0.824
amel4_ncbi_hmm37854
Apis mellifera
amel4_ncbi_hmm37854
I
0.817
AAEL009326
Aedes aegypti
AAEL009326
I
0.779
CpipJ_CPIJ019402
Culex pipiens
CpipJ_CPIJ019402
I
0.771
CPIJ019402
Culex quinquefasciatus
CPIJ019402
I
0.771
estExt_fgenesh1_pg.C_690020
Daphnia pulex
estExt_fgenesh1_pg.C_690020
N
0.740