CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GD15007
(
Drosophila simulans
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
FBgn0186679
T19967_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
mub_CONSTRUCT
M128_0.6
RNAcompete CONSTRUCTS
WACCCKW
RNAcompete
Ray et al.(2013)
RNCMPT00137
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0213409
KH
85
150
QHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLI
Links
Other
KH
family RBPs
Other
Drosophila simulans
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GL15268
Drosophila persimilis
FBgn0152872
I
1.000
GL24805
Drosophila persimilis
FBgn0162393
I
0.970
CPIJ015571
Culex quinquefasciatus
CPIJ015571
I
0.924
AAEL001245
Aedes aegypti
AAEL001245
I
0.924
CpipJ_CPIJ015571
Culex pipiens
CpipJ_CPIJ015571
I
0.924
PHUM522830
Pediculus humanus
PHUM522830
I
0.879