CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os08g01070
(
Oryza sativa
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
LOC_Os08g01070
T20146_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os08g01070.2
KH
180
256
PGHNIIGVLMGPESNAQKRLQEETGAKIRVYGIKRTNGEKSEIHQADIGEVQGAYEDLYINVSADTHDKVDAATALI
LOC_Os08g01070.4
KH
180
256
PGHNIIGVLMGPESNAQKRLQEETGAKIRVYGIKRTNGEKSEIHQADIGEVQGAYEDLYINVSADTHDKVDAATALI
Links
Other
KH
family RBPs
Other
Oryza sativa
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE026165
Oryza indica
BGIOSIBCE026165
N
0.987
SB07G001150
Sorghum bicolor
Sb07g001150
N
0.766
BRADI3G12880
Brachypodium distachyon
BRADI3G12880
N
0.753