CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cucsa.312350
(
Cucumis sativus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
Cucsa.312350
T20717_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.312350.1
KH
47
104
VFRVLFPVSRIDSLVGRDGDGLSKIREETGVEIRVEDTIPGCDERIAVIGGSNQETEV
Cucsa.312350.1
KH
185
252
ILRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPPFVATNVELVQISGGIDVVKKALELV
Cucsa.312350.1
KH
339
394
SYRLLCPTERVGNVIGKGGAIVKTLQQDTGCDIKVVDGALDSEDRIILVAGPAHPD
Cucsa.312350.1
KH
424
491
VARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQINGEPETVQDAMFQI
Cucsa.312350.1
KH
620
682
TVEVVVPRNIVPVICGENGECLKQIRQISDAKITITEPKQGDVETMIIISGTPEQTHAAQSLI
Links
Other
KH
family RBPs
Other
Cucumis sativus
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava35924.valid.m1
Manihot esculenta
cassava35924.valid.m1
N
0.721
ppa002274m
Prunus persica
ppa002274m
N
0.703