CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mgf002683m
(
Mimulus guttatus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
mgf002683m
T21284_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf002683m
KH
42
101
AYRILCPDSVIGSVIGKNGKVINTIRQESRAKVKVVDPFPGSRDRVITVYCYVREKEEIE
mgf002683m
KH
155
225
QCQLLVPSSQSANIIGKSGSTIKKLRKRTRTNIRVTAKDATDPAHACALEFDNFLVISGESEAVKKAIFAV
mgf002683m
KH
324
384
VKLLCPSNKIGRVIGKGGSAINNIRQDSGARIEVEDPKGKHNECVVTVISMESADDFKSMA
mgf002683m
KH
404
470
TFRLLVPSRVIGCIIGKSGSIINEIRKRTRADIRISKSEKPICAGDSDELVEIYGQVGNLRDAIIQI
mgf002683m
KH
567
629
AMEMLVPAYAVGKVIGKGGTNIDNIRKISGAEIEILDSKSSRGDRVALISGTTDQKRAAENLI
Links
Other
KH
family RBPs
Other
Mimulus guttatus
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma08g10330.1
Glycine max
Glyma08g10330.1
N
0.731
ppa002887m
Prunus persica
ppa002887m
N
0.722
Glyma05g27340.1
Glycine max
Glyma05g27340.1
N
0.721
MDP0000384450
Malus x domestica
MDP0000384450
N
0.713
PK14411.1
Cannabis sativa
PK14411.1
N
0.706
Cucsa.047830
Cucumis sativus
Cucsa.047830
N
0.706