CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
mgf008188m
(
Mimulus guttatus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
mgf008188m
T21291_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf008188m
KH
36
93
IYRYLCPLRKIGSIIGIGGDIAKQLRAQTNARIRISETIPGCDERVITIYSGSEETNS
mgf008188m
KH
133
200
TVRLLVPSDQIGCVIGKGGQIIQNIRSDTHAQIRILGSEHLPPCALSSDELIQINGEATTVKEALHQV
mgf008188m
KH
266
327
AVRLVCRTENIGAVIGKGGAVIKQIRQESGAFVKVDSAGADGDDCIISVSSKEMFEAPSRTI
mgf008188m
KH
351
418
TTRMLVPSSRIGCIIGKGGAIIKEMRNTSRANIRIFSDENIPKVASEDEEMVQVMGDPNAAKNALLQV
Links
Other
KH
family RBPs
Other
Mimulus guttatus
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
mgf010659m
Mimulus guttatus
mgf010659m
N
1.000
GSVIVG00019958001
Vitis vinifera
GSVIVG00019958001
N
0.734