CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000194087
(
Malus x domestica
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
MDP0000194087
T21819_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000194087
KH
41
97
AFRVLCPASKVDNVTGEGGSVISQIFQETLVKVRIEEAVPGCDERVIVVGSDGENDV
MDP0000194087
KH
185
252
VCRLLVLSSQVGCLLGKGGSVIKQMSSESGAQIRILPRDKLPSCAAVCDELVQISGNIDAVGKAIEYV
MDP0000194087
KH
333
364
TFRLLCPEERVGGVIGKGGTIIKTLKQETGCG
MDP0000194087
KH
397
464
MARLLVSSNQIGCLLGKGGTIIAEMRKLSRAHIRIMGKDQILRCASVDEEVVQINGEFEAVKDALLQI
MDP0000194087
KH
625
687
TVEVVVPSSLVPIINGEDGXCLKQIRQISDAKVTITEPKPGAVETVIIISGTPEQTHAAQSLI
Links
Other
KH
family RBPs
Other
Malus x domestica
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000209210
Malus x domestica
MDP0000209210
N
0.993
MDP0000260868
Malus x domestica
MDP0000260868
N
0.862
MDP0000258801
Malus x domestica
MDP0000258801
N
0.862
ppa002274m
Prunus persica
ppa002274m
N
0.810
GSVIVG00009261001
Vitis vinifera
GSVIVG00009261001
N
0.712