CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh5_synt.C_360006
(
Volvox carteri
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
estExt_fgenesh5_synt.C_360006
T24799_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh5_synt.C_360006
PUF
111
145
KVKGKLLELSNHHTASRVIQFCVKYGGDVERRTVM
estExt_fgenesh5_synt.C_360006
PUF
147
177
EVRANVVELSKSKYGHFLVRKLINTAKKDEV
Links
Other
PUF
family RBPs
Other
Volvox carteri
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_pg.C_310022
Chlamydomonas reinhardtii
estExt_fgenesh2_pg.C_310022
N
0.879