CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Minc06527
(
Meloidogyne incognita
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
Minc06527
T25891_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc06527
RRM
87
154
VILTSLPSYVDKDVLNILLARQGYHPIDIRVVRRNTDGGSVRVFGFIEFSDVYTAEDWISFNKGYLKL
Minc06527
RanBP ZF
179
208
LASDWTCSKCTINNFNRRTNCFKCGTSRQE
Minc06527
RRM
228
288
LLIRELPVTVTEEIIRSSLGKYTDLTVQRVQISSSKLYAFVQMRSSDEAGTVLHIFNKTVP
Links
Other
RanBP ZF,RRM
family RBPs
Other
Meloidogyne incognita
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Minc18558
Meloidogyne incognita
Minc18558
N
0.994