CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM359160
(
Pediculus humanus
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
PHUM359160
T27073_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM359160-PA
RanBP ZF
19
44
LEENYWDCSVCTYRNTAEAFKCLMCD
Links
Other
RanBP ZF
family RBPs
Other
Pediculus humanus
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm6926
Tribolium castaneum
amel4_ncbi_hmm6926
N
0.897
amel4_ncbi_hmm6926
Apis mellifera
amel4_ncbi_hmm6926
N
0.897
CpipJ_CPIJ008195
Culex pipiens
CpipJ_CPIJ008195
N
0.889
AAEL008263
Aedes aegypti
AAEL008263
N
0.889
CPIJ008195
Culex quinquefasciatus
CPIJ008195
N
0.889
nasonia_NCBI_hmm137104
Nasonia vitripennis
nasonia_NCBI_hmm137104
N
0.862
AGAP010288
Anopheles gambiae
AGAP010288
N
0.828
ISCW017896
Ixodes scapularis
ISCW017896
N
0.793
fgenesh1_pg.C_scaffold_97000016
Daphnia pulex
fgenesh1_pg.C_scaffold_97000016
N
0.793
GM15940
Drosophila sechellia
FBgn0170856
N
0.759
GI20311
Drosophila mojavensis
FBgn0143047
N
0.759
GD11693
Drosophila simulans
FBgn0183433
N
0.759
GJ22038
Drosophila virilis
FBgn0209152
N
0.759
GE14012
Drosophila yakuba
FBgn0231642
N
0.759
GK21447
Drosophila willistoni
FBgn0223439
N
0.759
GH19772
Drosophila grimshawi
FBgn0127236
N
0.759
RYBP
Drosophila melanogaster
FBgn0034763
N
0.759
GF11639
Drosophila ananassae
FBgn0088679
N
0.759
estExt_fgenesh1_pg.C_1000062
Nematostella vectensis
estExt_fgenesh1_pg.C_1000062
N
0.759
GG22783
Drosophila erecta
FBgn0114948
N
0.759
YAF2
Taeniopygia guttata
ENSTGUG00000005817
N
0.724
GA11466-RA
Drosophila pseudoobscura
FBgn0071517
N
0.724
GL11369
Drosophila persimilis
FBgn0148978
N
0.724
XP_001183014.1
Strongylocentrotus purpuratus
XP_001183014.1
N
0.700
XP_001186443.1
Strongylocentrotus purpuratus
XP_001186443.1
N
0.700