CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CLUG_04544
(
Candida lusitaniae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CLUG_04544
T28735_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CLUT_04544
RRM
165
233
MFIGGLNWDTTEEGLVSYFSKYGEILDYTIMKDASTGRSRGFGFLTFKDPRAVDEVIKKDHILDGKLID
CLUT_04544
RRM
249
318
IFVGGIDPLVNERDFNDFFSQFGHIIDAQLMIDKDTGRSRGFGFITYDSPEAVDRVCVNKYLTLKGKAME
Links
Other
RRM
family RBPs
Other
Candida lusitaniae
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPAG_05112
Candida parapsilosis
CPAG_05112
N
0.863
DEHA0F18139g
Debaryomyces hansenii
DEHA0F18139g
N
0.856
estExt_fgenesh1_pg.C_chr_8.10049
Pichia stipitis
estExt_fgenesh1_pg.C_chr_8.10049
N
0.849
LELG_02873
Lodderomyces elongisporus
LELG_02873
N
0.842
PGUG_04213
Candida guilliermondii
PGUG_04213
N
0.806
CTRG_02523
Candida tropicalis
CTRG_02523
N
0.806
Cd36_85120
Candida dubliniensis
Cd36_85120
N
0.784
orf19.5989
Candida albicans
orf19.5989
N
0.784
XP_002490478.1
Pichia pastoris
XP_002490478.1
N
0.734
KLLA0C12925g
Kluyveromyces lactis
KLLA0C12925g
I
0.712
Scas_Contig635.7
Saccharomyces castellii
Scas_Contig635.7
I
0.705