CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PGUG_00651
(
Candida guilliermondii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PGUG_00651
T30076_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGUT_00651
RRM
57
126
IIVKGLPSYCDEAKLRDHFSKQGNVTDVKLMKKRNGESRRFAFVGYKSIDDAEKAAKYFHQSFMDTARIH
PGUT_00651
RRM
351
421
LFVRNILYTSTEEEFRTLFQKYGSLEEVHIAVDTRTGKSKGFVYVQFKQPKDAVEAYKSLDKQIFQGRLLH
PGUT_00651
RRM
534
598
VLVKNFPYGTGVNELNEMFGQYGPIKRTLMPPAGTIAVIEFQDAPSARAAFTKLAYRKFNNSILY
PGUT_00651
RRM
655
730
VFVKNLNFSTTQPQLASVFEKLPGFASAIIKTKPDPKKSGATLSMGFGFVEFKSKEEAEAAISALNDYVLDGHKLQ
PGUT_00651
RRM
754
823
IIIKNLPFEATRKDVLELFGAFGQLKSVRVPKKFDKSARGFAFVEFVLLKEAENAMDQLEGVHLLGRRLV
Links
Other
RRM
family RBPs
Other
Candida guilliermondii
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_gwp_genewisePlus_human.C_chr_1.20440
Pichia stipitis
estExt_gwp_genewisePlus_human.C_chr_1.20440
N
0.784
orf19.1646
Candida albicans
orf19.1646
N
0.753
LELG_02925
Lodderomyces elongisporus
LELG_02925
N
0.750
Cd36_82010
Candida dubliniensis
Cd36_82010
N
0.747
CTRG_02384
Candida tropicalis
CTRG_02384
N
0.739
XP_002494157.1
Pichia pastoris
XP_002494157.1
N
0.724