CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PITG_06991
(
Phytophthora infestans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PITG_06991
T30147_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PITG_06991T0
RRM
89
159
IYLGRVPHGFYEKQMLGFFKQFGVVRRVRLSRNKRTGNSKHYAFIQFDEPEVAQIVANTMNEYRLFDHTLS
Links
Other
RRM
family RBPs
Other
Phytophthora infestans
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_kg.C_scaffold_12000201
Phytophthora capsici
fgenesh1_kg.C_scaffold_12000201
N
0.972
s_442721
Phytophthora sojae
s_442721
N
0.958
C_scaffold_44000026
Phytophthora ramorum
C_scaffold_44000026
N
0.930