CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PITG_11179
(
Phytophthora infestans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PITG_11179
T30163_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PITG_11179T0
RRM
203
277
VYVNGLPLDVTVQEVHDHFAKCGVIQPDIATGEPRIKLYQNKESGGLNGDGSVCYMKEASVELAVQLLDKSQIRP
PITG_11179T0
RRM
354
410
LQEDIHDECSKIGDVTKITLFAKHVDGVVVIKFASSGSAARCVDVMSGRFFAGRKLE
Links
Other
RRM
family RBPs
Other
Phytophthora infestans
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
s_469761
Phytophthora sojae
s_469761
N
0.939
fgenesh1_pm.C_scaffold_15000016
Phytophthora capsici
fgenesh1_pm.C_scaffold_15000016
N
0.902
C_scaffold_35000023
Phytophthora ramorum
C_scaffold_35000023
N
0.795