CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SPOG_03455
(
Schizosaccharomyces cryophilus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SPOG_03455
T30766_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPOG_03455T0
RRM
99
176
IFVYNLSPLVTADQLRYHFKSFGDISQLDLQLNPYTGTSLGLCRISFSKHESVSKAHLAAKLAVQQASGLKLSGKQLM
SPOG_03455T0
RRM
301
356
PDRVYYSDIKHHFRKFRYEGIYMNRDGFYITFNSYREASSCFWTLDKTFVQNCRIK
Links
Other
RRM
family RBPs
Other
Schizosaccharomyces cryophilus
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SOCG_03782
Schizosaccharomyces octosporus
SOCG_03782
N
0.963
set1
Schizosaccharomyces pombe
SPCC306.04c
N
0.701