CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SS1G_00956
(
Sclerotinia sclerotiorum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SS1G_00956
T30953_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SS1T_00956
RRM
251
309
FDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEYEDQKSCEQAYFKMQGVLIDDHRIH
Links
Other
RRM
family RBPs
Other
Sclerotinia sclerotiorum
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_10007
Botrytis cinerea
BC1G_10007
N
0.803
ANIA_09095
Aspergillus nidulans
CADANIAG00009519
N
0.775
ATEG_01850
Aspergillus terreus
CADATEAG00001841
N
0.761
estExt_fgenesh1_kg.C_170006
Cochliobolus heterostrophus C5
estExt_fgenesh1_kg.C_170006
N
0.761
MCYG_06073
Microsporum canis
MCYG_06073
N
0.761
AB03196.1
Alternaria brassicicola
AB03196.1
N
0.761
BDBG_04009
Blastomyces dermatitidis
BDBG_04009
N
0.746
CIMG_07762
Coccidioides immitis
CIMG_07762
N
0.746
TRV_03115
Trichophyton verrucosum
TRV_03115
N
0.746
ARB_04672
Arthroderma benhamiae
ARB_04672
N
0.746
AFUA_7G02170
Aspergillus fumigatus
CADAFUAG00001177
N
0.746
CPSG_09333
Coccidioides posadasii
CPSG_09333
N
0.746
HCAG_04417
Histoplasma capsulatum
HCAG_04417
N
0.746
PTRG_04608
Pyrenophora tritici repentis
PTRG_04608
N
0.746
SNOG_11457
Stagonospora nodorum
SNOG_11457
N
0.746
PABG_01156
Paracoccidioides brasiliensis
PABG_01156
N
0.746
MGYG_05886
Microsporum gypseum
MGYG_05886
N
0.746
TERG_06028
Trichophyton rubrum
TERG_06028
N
0.746
GSTUMT00009813001
Tuber melanosporum
GSTUMT00009813001
N
0.746
Pc21g11960
Penicillium chrysogenum
Pc21g11960
N
0.746
AO090038000594
Aspergillus oryzae
CADAORAG00009343
N
0.746
fgenesh1_pm.00868_#_101
Aspergillus carbonarius
fgenesh1_pm.00868_#_101
N
0.746
UREG_02113
Uncinocarpus reesii
UREG_02113
N
0.746
NFIA_114890
Neosartorya fischeri
CADNFIAG00010434
N
0.746
ACLA_065360
Aspergillus clavatus
CADACLAG00006149
N
0.746
AFLA_071340
Aspergillus flavus
CADAFLAG00008558
N
0.746
TEQG_07016
Trichophyton equinum
TEQG_07016
N
0.746
An12g00490
Aspergillus niger
CADANGAG00009498
N
0.746
EAT81165.2
Phaeosphaeria nodorum
EAT81165.2
N
0.746
PMAA_010740
Penicillium marneffei
PMAA_010740
N
0.718
FGSG_04479
Fusarium graminearum
FGSG_04479
N
0.718
estExt_Genewise1Plus.C_chr_40303
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_40303
N
0.704
fgenesh1_pm.sca_11_chr8_3_0000173
Nectria haematococca
fgenesh1_pm.sca_11_chr8_3_0000173
N
0.704
CHGG_06839
Chaetomium globosum
CHGG_06839
N
0.704
fgenesh1_pm.C_scaffold_9000117
Mycosphaerella fijiensis
fgenesh1_pm.C_scaffold_9000117
N
0.704
MGG_10681
Magnaporthe oryzae
MGG_10681
N
0.704