CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SS1G_04926
(
Sclerotinia sclerotiorum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SS1G_04926
T30973_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SS1T_04926
RRM
175
215
VWVGNLPWSVSKEELRKWFVEFSDLEEENITRIHMPGPNDG
SS1T_04926
RRM
220
262
KVEKKFGKPVHNKGFAYVDFATEEQVKMAVELSEQLLTGRRLL
SS1T_04926
RRM
289
348
IFVGNLRFDATEEILKEHFEKCGAIEKIHVATFEDSGKCKGYAWIVFEEVSAAQSAVKGW
Links
Other
RRM
family RBPs
Other
Sclerotinia sclerotiorum
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_14719
Botrytis cinerea
BC1G_14719
N
0.826