CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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VDAG_02565
(
Verticillium dahliae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
VDAG_02565
T31390_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDAG_02565T0
RRM
48
112
VLIRCLPKDIAMEQLRLMVVWSNEFQKIELVQESDDDESASALMTFRTPAGASEAKKMLHGKRNM
VDAG_02565T0
RRM
326
390
LYVGNLPIDTSEEELKAMFSKQRGYKRLCFRTKQNGPMCFVEFEDVTFATKALNELYGQPLHNSV
Links
Other
RRM
family RBPs
Other
Verticillium dahliae
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
VDBG_02100
Verticillium albo atrum
VDBG_02100
N
0.908
GLRG_02493
Colletotrichum graminicola
GLRG_02493
N
0.711