CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
amel4_ncbi_hmm8263
(
Apis mellifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
amel4_ncbi_hmm8263
T31941_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
amel4_ncbi_hmm8263
RRM
168
239
IHIGHLTRNVTKEHIMEIFSTYGQIKMVDFAMDKLHPNQGRGFAYVEFETADEAENAMKHMDGGQIDGQEIT
Links
Other
RRM
family RBPs
Other
Apis mellifera
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm458514
Nasonia vitripennis
nasonia_NCBI_hmm458514
N
0.875
RNPS1
Oryctolagus cuniculus
ENSOCUG00000004387
N
0.736
RNPS1
Pteropus vampyrus
ENSPVAG00000005105
N
0.722
RNPS1
Pan troglodytes
ENSPTRG00000031310
N
0.722
RNPS1
Oryzias latipes
ENSORLG00000008033
N
0.722
Rnps1
Rattus norvegicus
ENSRNOG00000008703
N
0.722
RNPS1
Procavia capensis
ENSPCAG00000004514
N
0.722
RNPS1
Sorex araneus
ENSSARG00000001577
N
0.722
RNPS1
Tarsius syrichta
ENSTSYG00000001629
N
0.722
RNPS1
Tursiops truncatus
ENSTTRG00000008220
N
0.722
RNPS1
Tupaia belangeri
ENSTBEG00000009098
N
0.722
RNPS1
Spermophilus tridecemlineatus
ENSSTOG00000013200
N
0.722
RNPS1
Sus scrofa
ENSSSCG00000008048
N
0.722
Rnps1
Mus musculus
ENSMUSG00000034681
N
0.722
RNPS1
Ochotona princeps
ENSOPRG00000016422
N
0.722
LOC100403592
Callithrix jacchus
ENSCJAG00000014969
N
0.722
Rnps1
Dipodomys ordii
ENSDORG00000001755
N
0.722
RNPS1
Choloepus hoffmanni
ENSCHOG00000004866
N
0.722
RNPS1
Canis familiaris
ENSCAFG00000019397
N
0.722
RNPS1_BOVIN
Bos taurus
ENSBTAG00000009969
N
0.722
RNPS1
Erinaceus europaeus
ENSEEUG00000005933
N
0.722
RNPS1
Cavia porcellus
ENSCPOG00000002066
N
0.722
RNPS1
Loxodonta africana
ENSLAFG00000000728
N
0.722
RNPS1
Felis catus
ENSFCAG00000007690
N
0.722
LOC695816
Macaca mulatta
ENSMMUG00000019238
N
0.722
RNPS1
Gasterosteus aculeatus
ENSGACG00000011261
N
0.722
RNPS1
Macropus eugenii
ENSMEUG00000008882
N
0.722
RNPS1
Homo sapiens
ENSG00000205937
N
0.722
AAI06520
Xenopus laevis
AAI06520
N
0.708
Q3KPW1
Xenopus laevis
Q3KPW1
N
0.708
Q5XG24
Xenopus laevis
Q5XG24
N
0.708
AAH84646
Xenopus laevis
AAH84646
N
0.708
rnps1
Xenopus tropicalis
ENSXETG00000024439
N
0.708
ENSRNOG00000021566
Rattus norvegicus
ENSRNOG00000021566
N
0.708
RNPS1
Vicugna pacos
ENSVPAG00000009976
N
0.708
RNPS1
Monodelphis domestica
ENSMODG00000015891
N
0.708