CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI1G13850
(
Brachypodium distachyon
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BRADI1G13850
T33119_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI1G13850.1
RRM
63
141
IVVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGGLWMPTDPETKKTLGYCFIEYNTPQEAELAREKTNGYKLDKSHIF
Links
Other
RRM
family RBPs
Other
Brachypodium distachyon
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB01G028520
Sorghum bicolor
Sb01g028520
N
0.899
GRMZM2G174757
Zea mays
GRMZM2G174757
N
0.886
mgf009210m
Mimulus guttatus
mgf009210m
N
0.848
ppa002067m
Prunus persica
ppa002067m
N
0.848
BRADI4G40280
Brachypodium distachyon
BRADI4G40280
N
0.835
BGIOSIBCE033128
Oryza indica
BGIOSIBCE033128
N
0.772
LOC_Os10g41960
Oryza sativa
LOC_Os10g41960
N
0.772
PDK_20s1307762g001
Phoenix dactylifera
PDK_20s1307762g001
N
0.747
cassava18372.valid.m1
Manihot esculenta
cassava18372.valid.m1
N
0.709
GSVIVG00036012001
Vitis vinifera
GSVIVG00036012001
N
0.709
29848.m004501
Ricinus communis
29848.m004501
N
0.709
cassava18371.valid.m1
Manihot esculenta
cassava18371.valid.m1
N
0.709
Glyma03g00470.1
Glycine max
Glyma03g00470.1
N
0.709
Glyma07g14870.1
Glycine max
Glyma07g14870.1
N
0.709