CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBN16784
(
Caenorhabditis brenneri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CBN16784
T34043_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBN16784
RRM
36
108
LRISGFDDRMEREEIKKCLTNELKKFAPFEIKVVKNPEEDERLAYVNFERNECARKVRYNLMNKLKAVLGKNV
CBN16784
RRM
169
234
LFVGNMPSDVKEKEIRAIFEEYGKVEEVDIKTPINTDAAYAFVMFQTVDQAISAKAGEQERSLRNG
CBN16784
RRM
251
314
LFVGGLGSWCDKELLQKAFSEYGFVEHVDYDNGDPFAYVVFENTHTSQEACKNLKGATLTKSNN
Links
Other
RRM
family RBPs
Other
Caenorhabditis brenneri
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN05633
Caenorhabditis brenneri
CBN05633
N
1.000
F29C4.7
Caenorhabditis elegans
F29C4.7
N
0.788
CRE10212
Caenorhabditis remanei
CRE10212
N
0.768