CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCING00000009052
(
Ciona intestinalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCING00000009052
T35422_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCINP00000018373
RRM
85
155
LIVNYLPQTLSDQEFYQLFNNVGAVTSARIIRDKQSGYSFGYGFVDYVKPEDADKAIQQLNGHPIQHKTIK
ENSCINP00000018373
RRM
171
239
LYVAGLNPDTSEESLKQRFSSYGTIIQTRVLKDKNTNLCSGIGFVLFNTKDEAMAAIKALNGAVFSQAS
ENSCINP00000018373
RRM
375
445
VYVYGIGPYTDENALWHLFFNFGTIVRVNVIYDQMKGTGKGYGFITFSTAAEASYAVAQMNGYVFQKKALQ
ENSCINP00000023191
RRM
12
82
LIVNYLPQTLSDQEFYQLFNNVGAVTSARIIRDKQSGYSFGYGFVDYVKPEDADKAIQQLNGHPIQHKTIK
ENSCINP00000023191
RRM
98
166
LYVAGLNPDTSEESLKQRFSSYGTIIQTRVLKDKNTNLCSGIGFVLFNTKDEAMAAIKALNGAVFSQAS
ENSCINP00000023191
RRM
264
334
VYVYGIGPYTDENALWHLFFNFGTIVRVNVIYDQMKGTGKGYGFITFSTAAEASYAVAQMNGYVFQKKALQ
ENSCINP00000023192
RRM
85
155
LIVNYLPQTLSDQEFYQLFNNVGAVTSARIIRDKQSGYSFGYGFVDYVKPEDADKAIQQLNGHPIQHKTIK
ENSCINP00000023192
RRM
171
239
LYVAGLNPDTSEESLKQRFSSYGTIIQTRVLKDKNTNLCSGIGFVLFNTKDEAMAAIKALNGAVFSQAS
ENSCINP00000023192
RRM
375
445
VYVYGIGPYTDENALWHLFFNFGTIVRVNVIYDQMKGTGKGYGFITFSTAAEASYAVAQMNGYVFQKKALQ
Links
Other
RRM
family RBPs
Other
Ciona intestinalis
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action