CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCJAG00000005163
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000005163
T35519_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000009416
RRM
167
194
SCEEILQVVFESFGNVKNVDIPVLDPYR
ENSCJAP00000009416
RRM
206
239
SFGLQTFEAFIQYQEATDFVKAMESLRGMKLMLK
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AKAP17A
Sus scrofa
ENSSSCG00000012627
N
0.887
ENSLAFG00000020744
Loxodonta africana
ENSLAFG00000020744
N
0.859
Ame_R003931
Ailuropoda melanoleuca
Ame_R003931
N
0.857
AKAP17A
Cavia porcellus
ENSCPOG00000027526
N
0.857
AKAP17A
Oryctolagus cuniculus
ENSOCUG00000024332
N
0.857
ENSECAG00000011820
Equus caballus
ENSECAG00000011820
N
0.857
Akap17b
Mus musculus
ENSMUSG00000059708
N
0.857
Akap17b
Rattus norvegicus
ENSRNOG00000009746
N
0.844
ENSCAFG00000018374
Canis familiaris
ENSCAFG00000018374
N
0.841
Q0VCT7_BOVIN
Bos taurus
ENSBTAG00000019553
N
0.815
ENSOANG00000011324
Ornithorhynchus anatinus
ENSOANG00000011324
N
0.810