CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A6MJU4_CALJA
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000020481
T35682_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000038055
RRM
10
84
LYVGGLSQDISEADLQNQFSRFGDVSDVDIITRKDDQVGNPQKVFAYINISVAEADLKKCMSVLNKTKWKGGTLQ
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XR_023129.1
Pan troglodytes
ENSPTRG00000021109
N
0.947
NOL8
Homo sapiens
ENSG00000198000
N
0.947
ENSPPYG00000019375
Pongo pygmaeus
ENSPPYG00000019375
N
0.933
NOL8
Macaca mulatta
ENSMMUG00000004629
N
0.933
NOL8
Loxodonta africana
ENSLAFG00000002184
N
0.880
NOL8
Spermophilus tridecemlineatus
ENSSTOG00000015195
N
0.867
NOL8
Cavia porcellus
ENSCPOG00000027360
N
0.867
NOL8
Tupaia belangeri
ENSTBEG00000014187
N
0.867
Q2KIJ3_BOVIN
Bos taurus
ENSBTAG00000018613
N
0.867
Ame_R016320
Ailuropoda melanoleuca
Ame_R016320
N
0.853
NOL8
Oryctolagus cuniculus
ENSOCUG00000008053
N
0.853
NOL8
Sus scrofa
ENSSSCG00000008069
N
0.840
NOL8
Tursiops truncatus
ENSTTRG00000008244
N
0.840
NOL8
Otolemur garnettii
ENSOGAG00000015009
N
0.840
NOL8
Myotis lucifugus
ENSMLUG00000015204
N
0.840
NOL8
Sorex araneus
ENSSARG00000010607
N
0.827
Nol8
Mus musculus
ENSMUSG00000021392
N
0.800
NOL8
Ochotona princeps
ENSOPRG00000003268
N
0.787
NOL8
Canis familiaris
ENSCAFG00000002324
N
0.733
NOL8
Microcebus murinus
ENSMICG00000014322
N
0.733