CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM46
(
Meleagris gallopavo
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMGAG00000001457
T38312_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM46
M052_0.6
Homo sapiens
RAUSAWD
RNAcompete
Ray et al.(2013)
RNCMPT00054
0.788
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000000909
RRM
63
132
VFVGKIPRNIYEDELVPLFERAGKIYELRLMMEFSGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFI
ENSMGAP00000000909
RRM
150
194
TEGVVDVIVCPDATDRTKNRGFAFVEYESHRAAAMARRRLLPGTF
ENSMGAP00000000909
RRM
223
287
LYVRNLMISTTEDTIKAEFNKFKPRVVERVKKLRDYAFVHFYNREDAVAAMSVMNGKCIDGASIE
Links
Other
RRM
family RBPs
Other
Meleagris gallopavo
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM46
Gallus gallus
ENSGALG00000009278
I
0.886
RBM46
Equus caballus
ENSECAG00000007649
I
0.803
RBM46
Taeniopygia guttata
ENSTGUG00000005307
I
0.793
RBM46
Gorilla gorilla
ENSGGOG00000001876
I
0.788
RBM46
Homo sapiens
ENSG00000151962
D
0.788
Ame_R017773
Ailuropoda melanoleuca
Ame_R017773
I
0.788
RBM46
Choloepus hoffmanni
ENSCHOG00000003429
I
0.788
RBM46
Canis familiaris
ENSCAFG00000008473
I
0.788
RBM46
Bos taurus
ENSBTAG00000001696
I
0.788
RBM46
Echinops telfairi
ENSETEG00000014902
I
0.788
RBM46
Sus scrofa
ENSSSCG00000008994
I
0.788
RBM46
Sorex araneus
ENSSARG00000006520
I
0.788
RBM46
Monodelphis domestica
ENSMODG00000001302
I
0.788
RBM46
Macaca mulatta
ENSMMUG00000021147
I
0.788
Rbm46
Rattus norvegicus
ENSRNOG00000025823
I
0.788
RBM46
Oryctolagus cuniculus
ENSOCUG00000017859
I
0.788
ENSPPYG00000015144
Pongo pygmaeus
ENSPPYG00000015144
I
0.788
RBM46
Pteropus vampyrus
ENSPVAG00000008376
I
0.788
RBM46
Pan troglodytes
ENSPTRG00000016538
I
0.788
RBM46
Macropus eugenii
ENSMEUG00000013328
I
0.783
RBM46
Loxodonta africana
ENSLAFG00000015448
I
0.783
RBM46
Anolis carolinensis
ENSACAG00000015599
I
0.783
LOC100409217
Callithrix jacchus
ENSCJAG00000001768
I
0.783
RBM46
Myotis lucifugus
ENSMLUG00000003221
I
0.783
RBM46
Tarsius syrichta
ENSTSYG00000010435
I
0.783
Rbm46
Mus musculus
ENSMUSG00000033882
I
0.778
RBM46
Dasypus novemcinctus
ENSDNOG00000016195
I
0.778
ENSCPOG00000020396
Cavia porcellus
ENSCPOG00000020396
I
0.778
RBM46
Tupaia belangeri
ENSTBEG00000013949
I
0.773
RBM46
Felis catus
ENSFCAG00000009246
I
0.773
ENSCPOG00000010284
Cavia porcellus
ENSCPOG00000010284
I
0.773
RBM46
Tursiops truncatus
ENSTTRG00000001239
I
0.768
RBM46
Ornithorhynchus anatinus
ENSOANG00000002141
I
0.759
Rbm46
Dipodomys ordii
ENSDORG00000006405
I
0.754
ENSCPOG00000019272
Cavia porcellus
ENSCPOG00000019272
I
0.749
RBM46
Erinaceus europaeus
ENSEEUG00000011824
I
0.744