CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ENSMODG00000023523
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000023523
T39219_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP1
M302_0.6
Homo sapiens
Sequence logo not available
ACCCMYMSGCMS
SELEX
Cook et al.(2011)
432_11604510
0.703
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000030260
RRM
324
382
LFVGNLPHDVDKAELKDFFRSHGNVVELQIHSGGKLPSLGFVVFDDLKPVQKILGSRPI
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_001369493.1
Monodelphis domestica
ENSMODG00000008993
I
0.850
AAH45051
Xenopus laevis
AAH45051
I
0.780
G3BP1
Anolis carolinensis
ENSACAG00000009792
I
0.770
G3BP1
Ornithorhynchus anatinus
ENSOANG00000005110
I
0.766
AAH72830
Xenopus laevis
AAH72830
I
0.763
XM_001367627.1
Monodelphis domestica
ENSMODG00000013903
N
0.761
G3BP1
Taeniopygia guttata
ENSTGUG00000000753
I
0.750
G3BP1
Meleagris gallopavo
ENSMGAG00000005963
I
0.750
g3bp1
Xenopus tropicalis
ENSXETG00000010712
I
0.746
G3BP1
Spermophilus tridecemlineatus
ENSSTOG00000015928
I
0.712
G3BP1
Microcebus murinus
ENSMICG00000012235
I
0.703
G3BP1
Homo sapiens
ENSG00000145907
D
0.703
Ame_R008928
Ailuropoda melanoleuca
Ame_R008928
I
0.703
ENSPPYG00000015968
Pongo pygmaeus
ENSPPYG00000015968
I
0.703
G3BP1
Pan troglodytes
ENSPTRG00000017438
I
0.703
G3bp1
Rattus norvegicus
ENSRNOG00000013186
I
0.703
G3BP1
Tarsius syrichta
ENSTSYG00000004570
I
0.703
G3BP1
Canis familiaris
ENSCAFG00000017841
I
0.703