CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Dnd1
(
Mus musculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMUSG00000044595
T39363_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000054412
RRM
60
127
VYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHNHQLRPSC
ENSMUSP00000054412
RRM
140
205
LTVDGLPLSLNRRALLLALQPFGPCLQETLLLPSPGSAPSQIALLKFSTHRAAAMAKKALVEGQSR
Links
Other
RRM
family RBPs
Other
Mus musculus
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSMUSG00000089721
Mus musculus
ENSMUSG00000089721
N
1.000
Dnd1
Rattus norvegicus
ENSRNOG00000016894
N
0.985
ENSTTRG00000010411
Tursiops truncatus
ENSTTRG00000010411
N
0.896
ENSTTRG00000001755
Tursiops truncatus
ENSTTRG00000001755
N
0.896
Ame_R000335
Ailuropoda melanoleuca
Ame_R000335
N
0.896
LOC100061778
Equus caballus
ENSECAG00000011014
N
0.896
Dnd1
Dipodomys ordii
ENSDORG00000014552
N
0.896
ENSTBEG00000006754
Tupaia belangeri
ENSTBEG00000006754
N
0.896
ENSSTOG00000002000
Spermophilus tridecemlineatus
ENSSTOG00000002000
N
0.896
ENSSSCG00000014374
Sus scrofa
ENSSSCG00000014374
N
0.896
ENSCAFG00000005888
Canis familiaris
ENSCAFG00000005888
N
0.888
DND1
Gorilla gorilla
ENSGGOG00000023180
N
0.881
ENSGGOG00000013166
Gorilla gorilla
ENSGGOG00000013166
N
0.881
ENSEEUG00000004338
Erinaceus europaeus
ENSEEUG00000004338
N
0.881
ENSG00000183403
Homo sapiens
ENSG00000183403
N
0.881
LOC100396355
Callithrix jacchus
ENSCJAG00000016345
N
0.881
ENSPPYG00000015863
Pongo pygmaeus
ENSPPYG00000015863
N
0.881
ENSCPOG00000009192
Cavia porcellus
ENSCPOG00000009192
N
0.873
ENSMLUG00000003195
Myotis lucifugus
ENSMLUG00000003195
N
0.873
ENSDNOG00000013017
Dasypus novemcinctus
ENSDNOG00000013017
N
0.873
ENSOCUG00000004240
Oryctolagus cuniculus
ENSOCUG00000004240
N
0.873
DND1
Bos taurus
ENSBTAG00000018845
N
0.873
XR_019943.1
Pan troglodytes
ENSPTRG00000017324
N
0.873
ENSETEG00000005397
Echinops telfairi
ENSETEG00000005397
N
0.866
ENSMMUG00000004480
Macaca mulatta
ENSMMUG00000004480
N
0.866
ENSLAFG00000008161
Loxodonta africana
ENSLAFG00000008161
N
0.851
ENSMODG00000011340
Monodelphis domestica
ENSMODG00000011340
N
0.815
ENSMEUG00000016276
Macropus eugenii
ENSMEUG00000016276
N
0.804