CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RNPC3
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000005694
T40136_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000007159
RRM
16
83
LLVRHLPSELSPDEKEDLLKYFGAESVRVFSNHGRMKHAAFATFKTKTLASKALTRLHQLEILDQKLV
ENSORLP00000007159
RRM
415
490
LYVKNISKQVEEKDLRYIYGRYIDPSSEEERNMFDVVLMKEGRMKGQAFIGLPNEQSAEKALRETNGFVLHDKPLV
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RNPC3
Gasterosteus aculeatus
ENSGACG00000002048
N
0.799
RNPC3
Takifugu rubripes
ENSTRUG00000001130
N
0.779
rnpc3
Danio rerio
ENSDARG00000011247
N
0.771
RNPC3
Tetraodon nigroviridis
ENSTNIG00000018963
N
0.766