CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSRNOG00000022823
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000022823
T41154_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000048026
RRM
75
139
LFVGNLPPDITEEEMRKLFEKHGKAGEVFTHEEKGFYFILLESGTLMEIAKVELDNTPLCAKQLQ
ENSRNOP00000048026
RRM
149
209
LTVHSLPQYMSSEPLEEAFSGFGQVERAVVIVNDKKALRERHFEFSLKPATQKALGRCSEG
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSOCUG00000021848
Oryctolagus cuniculus
ENSOCUG00000021848
I
0.705
Nono
Mus musculus
ENSMUSG00000031311
I
0.705
LOC697263
Macaca mulatta
ENSMMUG00000020481
I
0.705
NONO
Microcebus murinus
ENSMICG00000000232
I
0.705
NONO
Otolemur garnettii
ENSOGAG00000004834
I
0.705
NONO
Procavia capensis
ENSPCAG00000002541
I
0.705
Nono
Rattus norvegicus
ENSRNOG00000003689
I
0.705
NONO
Pteropus vampyrus
ENSPVAG00000016503
I
0.705
XR_025068.1
Pan troglodytes
ENSPTRG00000022010
I
0.705
ENSPPYG00000020451
Pongo pygmaeus
ENSPPYG00000020451
I
0.705
NONO
Loxodonta africana
ENSLAFG00000013422
I
0.705
NONO
Gorilla gorilla
ENSGGOG00000006194
I
0.705
LOC607081
Canis familiaris
ENSCAFG00000003207
I
0.705
Q2KJ42_BOVIN
Bos taurus
ENSBTAG00000012152
I
0.705
Ame_R017809
Ailuropoda melanoleuca
Ame_R017809
I
0.705
NONO
Vicugna pacos
ENSVPAG00000002272
I
0.705
ENSCAFG00000017071
Canis familiaris
ENSCAFG00000017071
I
0.705
TAF1
Callithrix jacchus
ENSCJAG00000013390
I
0.705
NONO
Homo sapiens
ENSG00000147140
D
0.705
NONO
Erinaceus europaeus
ENSEEUG00000014404
I
0.705
NONO
Equus caballus
ENSECAG00000008502
I
0.705
ENSCPOG00000010263
Cavia porcellus
ENSCPOG00000010263
I
0.705
NONO
Tursiops truncatus
ENSTTRG00000009605
I
0.705