CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBMS3
(
Spermophilus tridecemlineatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSTOG00000006324
T41595_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000005649
RRM
63
104
LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKXX
ENSSTOP00000005649
RRM
142
186
LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFAX
Links
Other
RRM
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000014050
Pongo pygmaeus
ENSPPYG00000014050
N
0.966
RBMS3
Tarsius syrichta
ENSTSYG00000002615
I
0.789
RBMS3
Procavia capensis
ENSPCAG00000006307
I
0.752
RBMS3
Macropus eugenii
ENSMEUG00000004772
I
0.752
RBMS3
Dasypus novemcinctus
ENSDNOG00000016645
I
0.752