Sxl (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0003659 T42992_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Sxl
M114_0.6		 Drosophila melanogaster UUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00119 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M114_0.6 RRM 51 121
M114_0.6 RRM 137 205

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0099570 RRM 87 157
FBpp0099570 RRM 173 241
FBpp0099572 RRM 117 187
FBpp0099572 RRM 203 271
FBpp0099573 RRM 127 197
FBpp0099573 RRM 213 281
FBpp0099575 RRM 87 157
FBpp0099575 RRM 173 241
FBpp0099577 RRM 119 189
FBpp0099577 RRM 205 273
FBpp0099578 RRM 119 189
FBpp0099578 RRM 205 273
FBpp0099579 RRM 112 182
FBpp0099579 RRM 198 266
FBpp0099580 RRM 119 189
FBpp0099580 RRM 205 273
FBpp0099582 RRM 127 197
FBpp0099582 RRM 213 281
FBpp0099585 RRM 117 187
FBpp0099585 RRM 203 271
FBpp0099587 RRM 117 187
FBpp0099587 RRM 203 271
FBpp0290062 RRM 127 197
FBpp0290062 RRM 213 281
FBpp0290064 RRM 117 187
FBpp0290064 RRM 203 271
FBpp0290065 RRM 95 165
FBpp0290065 RRM 181 249
FBpp0290066 RRM 127 197
FBpp0290066 RRM 213 281
FBpp0290067 RRM 87 157
FBpp0290067 RRM 173 241
FBpp0300562 RRM 95 165
FBpp0300562 RRM 181 249

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GL26885 Drosophila persimilis FBgn0164466 I 1.000
GI21573 Drosophila mojavensis FBgn0144303 I 1.000
GA22653-RA Drosophila pseudoobscura FBgn0244056 I 1.000
GK16445 Drosophila willistoni FBgn0218447 I 1.000
GE17544 Drosophila yakuba FBgn0235003 I 1.000
GG17637 Drosophila erecta FBgn0109859 I 1.000
Sxl Drosophila virilis FBgn0016470 I 1.000
Sxl Drosophila sechellia FBgn0043405 I 1.000
GF20968 Drosophila ananassae FBgn0097973 I 1.000
GH24172 Drosophila grimshawi FBgn0131628 I 0.986
Sxl Drosophila simulans FBgn0016343 I 0.836
AAEL011150 Aedes aegypti AAEL011150 I 0.787
GE16683 Drosophila yakuba FBgn0234180 I 0.771
GG12847 Drosophila erecta FBgn0105123 I 0.771
CG3056 Drosophila melanogaster FBgn0024987 I 0.771
GM19131 Drosophila sechellia FBgn0174033 I 0.771
GF21012 Drosophila ananassae FBgn0098017 I 0.764
GI16327 Drosophila mojavensis FBgn0139075 I 0.757
GK16696 Drosophila willistoni FBgn0218698 I 0.757
AGAP003899 Anopheles gambiae AGAP003899 I 0.754
GH12116 Drosophila grimshawi FBgn0119595 I 0.750
GJ15667 Drosophila virilis FBgn0202856 I 0.736