CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM18090
(
Drosophila sechellia
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0172997
T43842_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0199567
RRM
8
78
LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHKLNGKPIPGTNP
FBpp0199567
RRM
102
173
VWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIK
Links
Other
RRM
family RBPs
Other
Drosophila sechellia
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG15440
Drosophila melanogaster
FBgn0031607
N
1.000
GD22708
Drosophila simulans
FBgn0194105
N
1.000
GE14719
Drosophila yakuba
FBgn0232312
N
1.000
GG24374
Drosophila erecta
FBgn0116506
N
1.000
GK24678
Drosophila willistoni
FBgn0226638
N
0.993
GL15405
Drosophila persimilis
FBgn0153009
N
0.986
GA13731-RA
Drosophila pseudoobscura
FBgn0073767
N
0.986
GF24033
Drosophila ananassae
FBgn0101027
N
0.979
GJ17734
Drosophila virilis
FBgn0204903
N
0.979
GI17961
Drosophila mojavensis
FBgn0140701
N
0.972
GH11659
Drosophila grimshawi
FBgn0119139
N
0.958
CpipJ_CPIJ000880
Culex pipiens
CpipJ_CPIJ000880
N
0.860
CPIJ000880
Culex quinquefasciatus
CPIJ000880
N
0.860
AAEL011988
Aedes aegypti
AAEL011988
N
0.846
amel4_ncbi_hmm9601
Apis mellifera
amel4_ncbi_hmm9601
N
0.727
nasonia_NCBI_hmm450723
Nasonia vitripennis
nasonia_NCBI_hmm450723
N
0.715