CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM24493
(
Drosophila sechellia
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0179356
T43883_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG7804
M137_0.6
Drosophila melanogaster
WGKRUGR
RNAcompete
Ray et al.(2013)
RNCMPT00146
0.807
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0205970
RRM
109
174
LIVLGLSYKTTDQTFREFFETYGDVVKAEIKRDNTSGQSKGFGFVRFGSYNAQMRVLSKRHLIDGR
FBpp0205970
RRM
194
239
VFVGRCTEDIGAEDLREYFSQFGDVIEVVIPKPFRGFSFVTFLDPY
Links
Other
RRM
family RBPs
Other
Drosophila sechellia
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GD12565
Drosophila simulans
FBgn0184292
I
0.947
CG7804
Drosophila melanogaster
FBgn0036496
D
0.807