CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSVIVG00010842001
(
Vitis vinifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSVIVG00010842001
T44642_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSVIVT00010842001
RRM
19
83
LWVGNVGNSVTESDLLAVFSRFGALDCFISYSSRSFAFVYFRRGEDARAAREALQGMVVLGTPMK
GSVIVT00010842001
RRM
96
160
LWVGGFSPSTTKGELENEFLKFGKIEDFKFFWDRNSALVEYVKLEDASQALKGLNGKQIGGAMIR
GSVIVT00010842001
RRM
243
300
IQLEEQMLYNAMILFGEIERIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRIS
Links
Other
RRM
family RBPs
Other
Vitis vinifera
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000252696
Malus x domestica
MDP0000252696
N
0.714
MDP0000252655
Malus x domestica
MDP0000252655
N
0.709