CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os02g11750
(
Oryza sativa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
LOC_Os02g11750
T44955_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os02g11750.1
RRM
11
80
VYVGGLPYEANEDMLRDAFGRFGTIVSVKVINDQRVRGKCYGFVTFTHADAAQHAISGMDGKRINRRVVR
Links
Other
RRM
family RBPs
Other
Oryza sativa
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE006088
Oryza indica
BGIOSIBCE006088
N
1.000
GRMZM2G057642
Zea mays
GRMZM2G057642
N
0.771
Sb04g007250
Sorghum bicolor
Sb04g007250
N
0.771