CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCU01695
(
Neurospora crassa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
NCU01695
T45185_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCU01695T0
RRM
506
565
LFVGGVTCSEAELRSIFGRYGEVQTCIVNKEKRHAFVKMYYRQDAENAKKAMEENRGSDV
Links
Other
RRM
family RBPs
Other
Neurospora crassa
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1.C_100732
Neurospora discreta
estExt_Genewise1.C_100732
N
1.000
fgenesh1_pm.C_scaffold_13000026
Neurospora tetrasperma
fgenesh1_pm.C_scaffold_13000026
N
1.000
e_gw1.11.100.1
Trichoderma reesei
e_gw1.11.100.1
N
0.783
estExt_Genewise1Plus.C_70552
Trichoderma atroviride
estExt_Genewise1Plus.C_70552
N
0.767
estExt_Genewise1.C_61734
Thielavia terrestris
estExt_Genewise1.C_61734
N
0.746
estExt_Genewise1.C_71071
Myceliophthora thermophila
estExt_Genewise1.C_71071
N
0.734
FVEG_09501
Fusarium verticillioides
FVEG_09501
N
0.717
FOXG_11290
Fusarium oxysporum
FOXG_11290
N
0.717
estExt_fgenesh1_pg.C_20494
Cryphonectria parasitica
estExt_fgenesh1_pg.C_20494
N
0.714
e_gw1.8.536.1
Trichoderma virens
e_gw1.8.536.1
N
0.710
VDBG_03033
Verticillium albo atrum
VDBG_03033
N
0.700
FGSG_01424
Fusarium graminearum
FGSG_01424
N
0.700