CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ppa-cpf-2
(
Pristionchus pacificus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PPA07031
T45751_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PPA07031
RRM
17
87
VFVGNISYDVSEEQLRDVFSKAGTVVHLRLVHDRETGKPKGYGFAEFSDVKSAELAIRNLNGHELNGRALR
Links
Other
RRM
family RBPs
Other
Pristionchus pacificus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Bm1_06205
Brugia malayi
Bm1_06205
N
0.716
WUBG_08006
Wuchereria bancrofti
WUBG_08006
N
0.716
LOAG_12614
Loa loa
LOAG_12614
N
0.703